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Deep Chaudhuri

Shubhasish Haldar's Lab

Protein folding under force is an integral source of generating mechanical energy in various cellular processes, ranging from protein translation to degradation. Chaperones are specialized proteins known to interact with proteins under mechanical force and regulate their folding. But, how they respond to force and control cellular energetics remains elusive. To uncover this interesting phenomenon, we work at the interface of chemistry, physics, and biology. Here we have introduced microfluidic magnetic-tweezers technology to mimic the physiological force environment on substrate proteins, keeping the chaperones out of force influence. Previously we have reported the redox switchability of E.coli DsbA in the presence of mechanical force. We found chaperones behave differently, while these client proteins are under force than its previously known functions. We have managed to classify the chaperones as foldase (those who favors the folding) and holdase (those who favors the unfolding) and neutral (favors neither), according to their mechanical behavior under force. Further, we are expanding our study to various eukaryotic chaperones that might work under force as well as the bacterial periplasmic chaperones to decipher their mechanism in force -influenced protein folding.

Study at Ashoka

Study at Ashoka

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