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Publications

Year 2023

  • Ghosh A., Jaiswara R., Moonal, Sabhwarwa S., Dasoju V., Bhattarcharjee A. and Rajaraman B. K. 2023. Description of three new species of predatory Genus Hexacentrus (Orthoptera: Tettigoniidae) from India, with bioacoustic and morphological characterizations. Zootaxa, 5249(3), 335–356. https://doi.org/10.11646/zootaxa.5249.3.2
  • Asokan et al. (2023). Interim results from comparison of immune responses elicited by an inactivated and a vectored SARS-CoV-2 vaccine in seronegative and seropositive participants in India. MedRxiv 10.1101/2023.01.03.22284082; https://medrxiv.org/cgi/content/short/2023.01.03.22284082v1.
  • Iyer LR, Chandel N, Verma AK, Thakur V, Paul J, Mandal AK, Bhattacharya A. Effect of Entamoeba histolytica infection on gut microbial diversity and composition in diarrheal patients from New Delhi. Parasitol Res. 2023 Jan;122(1):285-298. doi: 10.1007/s00436-022-07728-9. Epub 2022 Nov 18. PMID: 36399171.
  • Melnattur, K. (2023). Sleep, Ageing, and Cognitive Decline. In: Jagota, A. (eds) Sleep and Clocks in Aging and Longevity. Healthy Ageing and Longevity, vol 18. Springer, Cham. https://doi.org/10.1007/978-3-031-22468-3_9
  • Garg KM, Chattopadhyay B, Paramanatha Swami Doss D, Vinoth Kumar AK, Kandula S. Bat Societies across Habitat Types: Insights from a Commonly Occurring Fruit Bat Cynopterus sphinx. InUrban Bats: Biology, Ecology, and Human Dimensions 2023 Jan 3 (pp. 61-71). Cham: Springer International Publishing.
  • Chattopadhyay B, Garg KM, Ray R, Mendenhall IH, Rheindt FE. Genetic Impoverishment in the Anthropocene: A Tale from Bats. InUrban Bats: Biology, Ecology, and Human Dimensions 2023 Jan 3 (pp. 19-31). Cham: Springer International Publishing.
  • Ng EY, Li S, Zhang D, Garg KM, Song G, Martinez J, Hung LM, Tu VT, Fuchs J, Dong L, Olsson U. Genome‐wide SNPs confirm plumage polymorphism and hybridisation within a Cyornis flycatcher species complex. Zoologica Scripta. 2023 Jan;52(1):1-6.
  • Holly L, Wong BLH, van Kessel R, Awah I, Agrawal A, Ndili N. Optimising adolescent wellbeing in a digital age. bmj. 2023;380
  • Kalra A, Jose AP, Prabhakaran P, Kumar A, Agrawal A, Roy A, et al. The burgeoning cardiovascular disease epidemic in Indians–perspectives on contextual factors and potential solutions. The Lancet Regional Health-Southeast Asia. 2023
  • Salvi S, Ghorpade D, Vanjare N, Madas S, Agrawal A. Interpreting lung oscillometry results: Z-scores or fixed cut-off values? ERJ Open Research. 2023;9(2
  • Vadala R, Pattnaik B, Bangaru S, Rai D, Tak J, Kashyap S, et al. A review on electronic nose for diagnosis and monitoring treatment response in lung cancer. Journal of Breath Research. 2023;
  • Banerjee, S., Chowdhury, D., Chakraborty, S. and Haldar, S.* (2023) “Force-regulated chaperone activity of BiP/ERdj3 is opposite to their homologs DnaK/DnaJ: explained by strain energy” (under review);  https://www.biorxiv.org/content/10.1101/2023.03.16.532907v1

Year 2022

  • Ruchitha, B.G., Kumar, N., Sura, C., and Tung, S., 2022. Selection for greater dispersal in early life leads to increased rate of age-dependent decline in locomotor activity and shorter lifespan. bioRxiv. DOI: 10.1101/2022.07.03.498422
  • Vaid et al. (2022). Evaluation of tumor‑infiltrating lymphocytes (TILs) in molecular subtypes of an Indian cohort of breast cancer patients. Diagnostics Pathology. https://doi.org/10.1186/s13000-022-01271-y. (MedRxiv. doi: https://doi.org/10.1101/2020.08.19.20177865.)
  • Nivedita et al. (2022). A Tale of Two Waves: Diverse Genomic and Transmission Landscapes Over 15 Months of the COVID-19 Pandemic in Pune, India. MedRxiv https://www.medrxiv.org/content/10.1101/2022.11.05.22281203v1.
  • Koppiker at al. (2022). “3rd ICGA Conference 2022 ‘Biobanking to Omics – Collecting the Global Experience. JCO Globoal Oncology (in press).
  • Mave et al. (2022). Association of national and regional lockdowns with COVID-19 infection rates in Pune, India. Scientific Reports 12, Article number: 10446. https://www.nature.com/articles/s41598-022-14674-0. 
  • Subissi L, von Gottberg A, Thukral L, Worp N, Oude Munnink BB, Rathore S, et al. An early warning system for emerging SARS-CoV-2 variants. Nat Med. 2022 Jun;28(6):1110–5
  • Lazarus JV, Romero D, Kopka CJ, Karim SA, Abu-Raddad LJ, Almeida G, et al. A multinational Delphi consensus to end the COVID-19 public health threat. Nature. 2022 Nov;611(7935):332–45
  • Frostad JJ, Nguyen QP, Baumann MM, Blacker BF, Marczak LB, Deshpande A, et al. Mapping development and health effects of cooking with solid fuels in low-income and middle-income countries, 2000–18: a geospatial modelling study. The Lancet Global Health. 2022;10(10):e1395–411
  • Tan YR, Agrawal A, Matsoso MP, Katz R, Davis SL, Winkler AS, et al. A call for citizen science in pandemic preparedness and response: beyond data collection. BMJ global health. 2022;7(6):e009389
  • Dhiraj Kumar Hazra, Bhalchandra S Pujari, Snehal M Shekatkar, Farhina Mozaffer, Sitabhra Sinha, Vishwesha Guttal, Pinaki Chaudhuri, Gautam I Menon. Modelling the first wave of COVID-19 in India. PLoS Comput. Biol. 18(10): e1010632 (2022).
  • Farhina Mozaffer, Philip Cherian, Sandeep Krishna, Brian Wahl and Gautam I Menon. School Reopenings, Hybrid Immunity, and the Impact of the Omicron variant in India. The Lancet Regional Health-Southeast Asia (2022): 100095. https://doi.org/10.1016/j.lansea.2022.100095
  • Farhina Mozaffer, Gautam I. Menon and Farah Ishtiaq. Exploring the thermal limits of malaria transmission in the western Himalaya. Ecology and Evolution, 12, e9278 (2022); https://doi.org/10.1002/ece3.9278
  • Neha Paddillaya, Kalyani Ingale, Chaitanya Gaikwad, Deepak Kumar Saini, Pramod Pullarkat, Paturu Kondaiah, Gautam I. Menon, Namrata Gundiah. Cell adhesion strength and tractions are mechano-diagnostic features of cellular invasiveness. Soft Matter, DOI: 10.1039/d2sm00015f, (2022).
  • P. Varuni, Shakti N. Menon and Gautam I Menon. Phototactic cyanobacteria as an active matter system. Ind. J. Phys., May 2022; https://doi.org/10.1007/s12648-022-02371-7
  • Siva Athreya,  Gautam I Menon and Rajesh Sundaresan. COVID-19 Modelling for India and a Road-Map for the future. Communications of the ACM 65, 1,  82 (2022).
  • Singh SS, Mansuri MS, Naiyer S, Kaur D, Agrahari M, Srinivasan S, Jhingan GD, Bhattacharya A, Bhattacharya S. Multi-omics analysis to characterize molecular adaptation of Entamoeba histolytica during serum stress. Proteomics. 2022 Nov;22(22):e2200148. doi: 10.1002/pmic.202200148. Epub 2022 Sep 13. PMID: 36066285.
  • Naiyer S, Singh SS, Kaur D, Mukherjee A, Singh YP, Bhattacharya A, Bhattacharya S. Transcriptomic analysis of ribosome biogenesis and pre-rRNA processing during growth stress in Entamoeba histolytica. Exp Parasitol. 2022 Aug;239:108308. doi: 10.1016/j.exppara.2022.108308. Epub 2022 Jun 17. PMID: 35718007.
  • Sharma S, Chanana P, Bharadwaj R, Bhattacharya S, Arya R. Functional characterization of GNE mutations prevalent in Asian subjects with GNE myopathy, an ultra-rare neuromuscular disorder. Biochimie. 2022 Aug;199:36-45. Doi: 10.1016/j.biochi.2022.03.014. Epub 2022 Apr 7. PMID: 35398442.
  • Awasthi K, Bhattacharya S, Bhattacharya A. Tissue-specific isoform expression of GNE gene in human tissues. J Muscle Res Cell Motil. 2022 Jun;43(2):49-61. doi: 10.1007/s10974-022-09618-0. Epub 2022 May 7. PMID: 35524895.
  • Kaur D, Agrahari M, Bhattacharya A, Bhattacharya S. The non-LTR retrotransposons of Entamoeba histolytica: genomic organization and biology. Mol Genet Genomics. 2022 Jan;297(1):1-18. doi: 10.1007/s00438-021-01843-5. Epub 2022 Jan 9. PMID: 34999963.
  • Shankar P., Rajaraman B. K., Shaikh A., Patel P, Nannapaneni A., Sharma S, Sharma R., Sarkar A., Pemde H. 2022. Decolonizing gender in India. The Lancet Global Health (10(2):e173-e174).
  • Majeed N. A., Singh D., Gopal A.B., Battiwala T., Kulshreshtha N., Mishra R., Sabharwal S., Behera M., Sahu M., Menon A., Bungsut L., Walia A., Saraf R., Mathew S., Shah A., Kochhar S., Salar N., Thakuri S., Dasgupta D., Prakash P., Ghosh A., Agarwal V., Pal S., Nagpal P., Mishra N., Sahani K., Lakhiani R., Shanavas S., Sharma Y., Rampuria N., Bhattacharjee A., Wagh N., Hegde S., Bulhan I., Singh G., Rajaraman B. K. 2022. Non-abstract symbolic representation of reward quantity in wild zebrafish (Danio rerio). https://biorxiv.org/cgi/content/short/2022.03.17.484678v1.
  • Singh A., Kumari K. and Rajaraman B.K. 2022. Violation of rationality in shoaling decision making in zebrafish (Danio rerio). https://www.biorxiv.org/content/10.1101/2022.08.31.506011v1.
  • Laasya Samhita* Re-reading the genetic code: the evolutionary potential of frameshifting in time, Journal of Biosciences, July 2022.
  • The enigmatic clock of dinoflagellates, is it unique? Dinesh Balasaheb Jadhav, Yoshita Sriramkumar, Sougata Roy. Oct. 2022. Frontiers in Microbiology. 19;13:1004074. doi: 10.3389/fmicb.2022.1004074.
  • Sanyal A, Agarwal S, Ramakrishnan U, Garg KM, Chattopadhyay B. Using environmental sampling to enable zoonotic pandemic preparedness. Journal of the Indian Institute of Science. 2022 Apr;102(2):711-30.
  • Garg KM, Chattopadhyay B, Cros E, Tomassi S, Benedick S, Edwards DP, Rheindt FE. Island biogeography revisited: museomics reveals affinities of shelf island birds determined by bathymetry and paleo-rivers, not by distance to mainland. Molecular Biology and Evolution. 2022 Jan;39(1):msab340.
  • Shit B, Prakash A*, Sarkar S, Vale P, Khan I *. Ageing leads to nonspecific antimicrobial peptide responses in Drosophila melanogaster. Proceedings of the Royal Society B. 289, 20221642 (online access)
  • Krishna, S., Jos, E. & Somanathan, H. (2022). The adaptive function of touch-sensitive stigmas. Plant Ecology (https://doi.org/10.1007/s11258-022-01281-2)
  • Jaiswal, S., Aneja, B., Jagannadham, J., Pandey, B., Chhokar, R.S., Gill, S.C., Ahlawat, O.P., Kumar, A., Angadi, U.B., Rai, A. and Tiwari, R., (2022). Unveiling the Wheat Microbiome under Varied Agricultural Field Conditions. Microbiology Spectrum, pp.e02633-22. https://doi.org/10.1128/spectrum.02633-22
  • An assessment of remotely sensed environmental variables on Dengue epidemiology in Central India https://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0010859
  • Genomic Surveillance of COVID-19 Variants With Language Models and Machine Learning https://www.frontiersin.org/articles/10.3389/fgene.2022.858252/full
  • Krishna, S., Gopinath, A. & Bhattacharjee, S.M. (2022). Ordering and topological defects in social wasps’ nests. Scientific Reports 12, 12901 (https://doi.org/10.1038/s41598-022-16836-6)
  • Yamada, K., Deb, A., Shoba, V. M., Lim, D., Maji, B., Modell, A. E., & Choudhary, A. (n.d.). Rational Design of Silicon-Based Zinc Ionophores. Angewandte Chemie International Edition, n/a(n/a), e202201698. https://doi.org/10.1002/anie.202201698
  • Mishra, A., Tung, S., Sruti, V. R. S., Shreenidhi, P. M., & Dey, S. (2022). Desiccation Stress Acts as Cause as well as Cost of Dispersal in Drosophila melanogaster. The American Naturalist, 199(4), E111–E123. https://doi.org/10.1086/718641
  • Chakraborty, S., Chaudhuri, D., Chaudhuri, D., Singh, V., Banerjee, S., Chowdhury, D., & Haldar, S. (2022). Connecting conformational stiffness of the protein with energy landscape by a single experiment. Nanoscale. https://doi.org/10.1039/D1NR07582A
  • Chakraborty, S., Chaudhuri, D., Banerjee, S., Bhatt, M., & Haldar, S. (2022). Direct observation of chaperone-modulated talin mechanics with single-molecule resolution. Communications Biology, 5(1), 1–14. https://doi.org/10.1038/s42003-022-03258-3

Year 2021

  • Shakti N. Menon, P. Varuni, Freddy Bunbury, Devaki Bhaya and Gautam I Menon. Phototaxis in cyanobacteria: From mutants to models of collective behavior. MBio, Volume 12 Issue 6 e02398-21 (2021).
  • Khan, S., Pradhan, S.J., Giraud, G., Bleicher, F., Paul, R., Merabet, S. and Shashidhara, L.S. (2021). A micro-evolutionary change in target binding sites as key determinant of Ultrabithorax function in Drosophila. Biorxiv.;  https://doi.org/10.1101/2021.08.17.456507. 
  • Raman, D., & Rajaraman, B. K. 2021. Self-efficacy assessment hinders improvement on a deliberate cricket bowling practice task.  psyarxiv.com/mw8nv 
  • Giridhara Babu, Debashree Ray, Ritwik Bhaduri, Aritra Halder, Ritoban Kundu,Gautam I Menon and Bhramar Mukherjee. COVID-19 Pandemic in India: Through the Lens of Modeling. Glob Health Sci Pract. 2021; 9(2).
  • Sanhita Nandi, Chandrani Kumari, Uma Rani Potunuru, Abel Arul Nathan, Jayashree Gopal, Gautam I Menon, Rahul Siddharthan, Madhulika Dixit and Paul Ramesh Thangaraj.  Altered kinetics of circulating progenitor cells in cardiopulmonary bypass (CPB) associated vasoplegic patients: A pilot study. PLoS ONE 15(11): e0242375 (2021); https://doi.org/10.1371/journal.pone.0242375
  • Krishna, S., & Keasar, T. (2021). Generalization of Foraging Experience Biases Bees Toward Flowers With Complex Morphologies. Frontiers in Ecology and Evolution, 9, 291. https://doi.org/10.3389/fevo.2021.655086
  • Kaur, D., Agrahari, M., Singh, S. S., Mandal, P. K., Bhattacharya, A., & Bhattacharya, S. (2021). Transcriptomic analysis of Entamoeba histolytica reveals domain-specific sense strand expression of LINE-encoded ORFs with massive antisense expression of RT domain. Plasmid, 114, 102560. https://doi.org/10.1016/j.plasmid.2021.102560
  • Singh, N., Naiyer, S., & Bhattacharya, S. (2021). Ultra-structural analysis and morphological changes during the differentiation of trophozoite to cyst in Entamoeba invadens. Molecular and Biochemical Parasitology, 242, 111363. https://doi.org/10.1016/j.molbiopara.2021.111363
  • Awasthi, K., Srivastava, A., Bhattacharya, S., & Bhattacharya, A. (2021). Tissue specific expression of sialic acid metabolic pathway: Role in GNE myopathy. Journal of Muscle Research and Cell Motility, 42(1), 99–116. https://doi.org/10.1007/s10974-020-09590-7
  • Bharadwaj, R., Bhattacharya, A., & Somlata. (2021). Coordinated activity of amoebic formin and profilin are essential for phagocytosis. Molecular Microbiology, 116(3), 974–995. https://doi.org/10.1111/mmi.14787
  • Monteiro, J., Pujari, B., Bhattacharrya, S. M., Raghunathan, A., Keskar, A., Shaikh, A., Bogam, P., Kadu, S., Raut, N., Vavale, D., Mishra, R., Kembhavi, A., Shashidhara, L. S., & Mave, V. (2021). Into the thirteenth Month: A Case Study on the Outbreak Analytics and Modeling the spread of SARS-CoV-2 Infection in Pune City, India (p. 2021.06.22.21259295). https://doi.org/10.1101/2021.06.22.21259295
  • Bogam, P., Joshi, J., Nagarkar, S., Jain, D., Gupte, N., Shashidhara, L.S., Monteiro, J.M. and Mave, V. (2021). The burden of COVID-19 and Case Fatality Rate in Pune India: An Analysis of First and Second Wave of the Pandemic.  International Journal of Infectious Diseases (IJID) Regions, 2, 2022, 74-81. https://doi.org/10.1016/j.ijregi.2021.12.006. 
  • Rahman, A., & Shashidhara, L. S. (n.d.). Analyzing the influence of IL18 in regulation of YAP1 in breast oncogenesis using cBioportal. Cancer Reports, n/a(n/a), e1484. https://doi.org/10.1002/cnr2.1484
  • Chakraborty, A., Kumar, S., Shashidhara, L. S., & Taneja, A. (2021). Building Sustainable Societies through Purpose-Driven Universities: A Case Study from Ashoka University (India). Sustainability, 13(13), 7423. https://doi.org/10.3390/su13137423
  • Busheri, L., Dixit, S., Nare, S., Alhat, R., Thomas, G., Jagtap, M., Navgire, R., Shinde, P., Banale, R., Unde, R., Reddy, R., Shaikh, S., Konnur, A., Namewar, N., Bapat, A., Patil, A., Johari, R., Kushwaha, R., Kumari, W., …Shashidhara, L.S., Koppiker, C.B.,& Kulkarni, M. (2021). Breast cancer biobank from a single institutional cohort in an urban setting in india: Tumor characteristics and survival outcomes. Cancer Treatment and Research Communications, 28, 100409. https://doi.org/10.1016/j.ctarc.2021.100409
  • Paul, R., Giraud, G., Domsch, K., Duffraisse, M., Marmigère, F., Khan, S., Vanderperre, S., Lohmann, I., Stoks, R., Shashidhara, L. S., & Merabet, S. (2021). Hox dosage contributes to flight appendage morphology in Drosophila. Nature Communications, 12(1), 2892. https://doi.org/10.1038/s41467-021-23293-8
  • Mishra, A., Tung, S., Sruti, V. R. S., Shreenidhi, P. M., & Dey, S. (2021). Desiccation stress acts as cause as well as cost of dispersal in Drosophila melanogaster (p. 2021.03.27.437318). https://doi.org/10.1101/2021.03.27.437318
  • Tung, S., Bakerlee, C. W., Phillips, A. M., Nguyen Ba, A. N., & Desai, M. M. (2021). The genetic basis of differential auto diploidization in evolving yeast populations. G3 Genes|Genomes|Genetics, 11(8). https://doi.org/10.1093/g3journal/jkab192
  • Eckels, E. C., Chaudhuri, D., Chakraborty, S., Echelman, D. J., & Haldar, S. (2021). DsbA is a redox-switchable mechanical chaperone (p. 310169).” Chemical Sciences, 2021, 12, 11109-11120; https://doi.org/10.1039/D1SC03048E
  • Hazra, D. K., Pujari, B. S., Shekatkar, S. M., Mozaffer, F., Sinha, S., Guttal, V., Chaudhuri, P., & Menon, G. I. (2021). The INDSCI-SIM model for COVID-19 in India (p. 2021.06.02.21258203). https://doi.org/10.1101/2021.06.02.21258203
  • Kumar, V., Vasudevan, A., Venkatesh, K., Maiya, R., Sood, P., Murthy, K., Koushika, S. P., & Menon, G. I. (2021). Cargo crowding, stationary clusters and dynamical reservoirs in axonal transport (p. 2021.03.12.434740). https://doi.org/10.1101/2021.03.12.434740
  • Babu, G. R., Ray, D., Bhaduri, R., Halder, A., Kundu, R., Menon, G. I., & Mukherjee, B. (2021). COVID-19 Pandemic in India: Through the Lens of Modeling. Global Health: Science and Practice, 9(2), 220–228. https://doi.org/10.9745/GHSP-D-21-00233
  • Foy, B. H., Wahl, B., Mehta, K., Shet, A., Menon, G. I., & Britto, C. (2021). Comparing COVID-19 vaccine allocation strategies in India: A mathematical modelling study. International Journal of Infectious Diseases, 103, 431–438. https://doi.org/10.1016/j.ijid.2020.12.075
  • Bagchi, B., Seal, S., Raina, M., Basu, D. N., & Khan, I. (2021). Carcass scavenging relaxes chemical-driven female interference competition in flour beetles. The American Naturalist. https://doi.org/10.1086/717250
  • Seal, S., Dharmarajan, G., & Khan, I. (2021). Evolution of pathogen tolerance and emerging infections: A missing experimental paradigm. ELife, 10, e68874. https://doi.org/10.7554/eLife.68874
  • Bagchi, B., Corbel, Q., Khan, I., Payne, E., Banerji, D., Liljestrand-Rönn, J., Martinossi-Allibert, I., Baur, J., Sayadi, A., Immonen, E., Arnqvist, G., Söderhäll, I., & Berger, D. (2021). Sexual conflict drives micro- and macroevolution of sexual dimorphism in immunity. BMC Biology, 19(1), 114. https://doi.org/10.1186/s12915-021-01049-6
  • Banerjee, S., Chakraborty, S., Sreepada, A., Banerji, D., Goyal, S., Khurana, Y., & Haldar, S. (2021). Cutting-Edge Single-Molecule Technologies Unveil New Mechanics in Cellular Biochemistry. Annual Review of Biophysics, 50, 419–445. https://doi.org/10.1146/annurev-biophys-090420-083836
  • Alonso-Caballero, A., Echelman, D. J., Tapia-Rojo, R., Haldar, S., Eckels, E. C., & Fernandez, J. M. (2021). Protein folding modulates the chemical reactivity of a Gram-positive adhesin. Nature Chemistry, 13(2), 172–181. https://doi.org/10.1038/s41557-020-00586-x
  • Roy, S., Sipthorp, J., Mahata, B., Pramanik, J., Hennrich, M. L., Gavin, A.-C., Ley, S. V., & Teichmann, S. A. (2021). CLICK-enabled analogues reveal pregnenolone interactomes in cancer and immune cells. IScience, 24(5). https://doi.org/10.1016/j.isci.2021.102485
  • Chattopadhyay, B., Forcina, G., Garg, K. M., Irestedt, M., Guerrini, M., Barbanera, F., & Rheindt, F. E. (2021). Novel genome reveals susceptibility of popular gamebird, the red-legged partridge (Alectoris rufa, Phasianidae), to climate change. Genomics, 113(5), 3430–3438. https://doi.org/10.1016/j.ygeno.2021.08.010
  • Garg, K. M., & Chattopadhyay, B. (2021). Gene Flow in Volant Vertebrates: Species Biology, Ecology and Climate Change. Journal of the Indian Institute of Science, 101(2), 165–176. https://doi.org/10.1007/s41745-021-00239-z
  • Chattopadhyay, B., Garg, K. M., Swami Doss, D. P., Vinothkumar, A. K., Kandula, S., Rheindt, F. E., & Ramakrishnan, U. (2021). Cryptic diversity of Rhinolophus lepidus in South Asia and differentiation across a biogeographic barrier. Frontiers of Biogeography, 0(0). https://doi.org/10.21425/F5FBG49625
  • Tan, H. Z., Jansen, J. J. F. J., Allport, G. A., Garg, K. M., Chattopadhyay, B., Irestedt, M., Chilton, G., Gwee, C. Y., & Rheindt, F. E. (2021). Historical climate change and megafaunal extinctions linked to genetic diversity declines in shorebirds (p. 2021.07.02.450884). https://doi.org/10.1101/2021.07.02.450884

Year 2020

  • Ghose, A., Bhattacharya, S., Karthikeyan, A.S., Kudale, A., Monteiro, J.M., Joshi, A., Medigeshi, G., Kang, G., Bal, V., Rath, S., Shashidhara, L.S., John, J., Chaudhuri, S. and Nagarkar, A. (2020). Community prevalence of antibodies to SARS-CoV-2 and correlates of protective immunity in five localities in an Indian metropolitan city. MedRxiv. doi: https://doi.org/10.1101/2020.11.17.20228155.      
  • Vaid, P. M., Puntambekar, A. K., Banale, R. A., Reddy, R. R., Unde, R. R., Namewar, N. P., Kelkar, D. A., Shashidhara, L. S., Koppiker, C. B., & Kulkarni, M. (2020). Stromal Tumor Infiltrating Lymphocytes (sTILs) as a putative prognostic marker to identify a responsive subset of TNBC in an Indian Breast Cancer Cohort (p. 2020.08.19.20177865). https://doi.org/10.1101/2020.08.19.20177865
  • Nagarkar, S., Wasnik, R., Govada, P., Cohen, S., & Shashidhara, L. S. (2020). Promoter Proximal Pausing Limits Tumorous Growth Induced by the Yki Transcription Factor in Drosophila. Genetics, 216(1), 67–77. https://doi.org/10.1534/genetics.120.303419
  • Chakladar M, Nair, MG., Prabhu, JS., Sridhar, TS., Kelkar, D., Kulkarni, M., Shashidhara, LS (2020). PTPN11 / SHP2 negatively regulates growth in breast epithelial cells: implications on tumorigenesis. BioRxiv. doi: https://doi.org/10.1101/2020.07.30.228445. 
  • Groth, C., Vaid, P., Khatpe, A., Prashali, N., Ahiya, A., Andrejeva, D., Chakladar, M., Nagarkar, S., Paul, R., Kelkar, D., Eichenlaub, T., Herranz, H., Sridhar, T., Cohen, S. M., & Shashidhara, L. (2020). Genome-Wide Screen for Context-Dependent Tumor Suppressors Identified Using in Vivo Models for Neoplasia in Drosophila. G3 Genes|Genomes|Genetics, 10(9), 2999–3008. https://doi.org/10.1534/g3.120.401545
  • Kulkarni, A., Kelkar, D. A., Parikh, N., Shashidhara, L. S., Koppiker, C. B., & Kulkarni, M. (2020). Meta-Analysis of Prevalence of Triple-Negative Breast Cancer and Its Clinical Features at Incidence in Indian Patients With Breast Cancer. JCO Global Oncology, 6, 1052–1062. https://doi.org/10.1200/GO.20.00054
  • Nandi, S., Potunuru, U. R., Kumari, C., Nathan, A. A., Gopal, J., Menon, G. I., Siddharthan, R., Dixit, M., & Thangaraj, P. R. (2020). Altered kinetics of circulating progenitor cells in cardiopulmonary bypass (CPB) associated vasoplegic patients: A pilot study. PLOS ONE, 15(11), e0242375. https://doi.org/10.1371/journal.pone.0242375
  • Agrawal, A., Ganai, N., Sengupta, S., & Menon, G. I. (2020). Nonequilibrium Biophysical Processes Influence the Large-Scale Architecture of the Cell Nucleus. Biophysical Journal, 118(9), 2229–2244. https://doi.org/10.1016/j.bpj.2019.11.017
  • Somanathan, H., Krishna, S., Jos, E. M., Gowda, V., Kelber, A., & Borges, R. M. (2020). Nocturnal Bees Feed on Diurnal Leftovers and Pay the Price of Day – Night Lifestyle Transition. Frontiers in Ecology and Evolution, 8, 288. https://doi.org/10.3389/fevo.2020.566964
  • Bhattacharya, A., Bhattacharya, S. & Katoch, V. M. (2020) Vaccine and drug trials in the COVID-19 pandemic: lessons for India. Current Science, 119, 171-172.
  • Ankit Agrawal, Nirmalendu Ganai,  Surajit Sengupta and Gautam I. Menon. Non-equilibrium biophysical processes influence the large-scale architecture of the cell nucleus. Biophys. J. 118(9), 2229-2244 (2020).

Year 2019

  • Sharma, S., Agarwal, S., Bharadwaj, R., Somlata, Bhattacharya, S., & Bhattacharya, A. (2019). Novel regulatory roles of PtdIns(4,5)P2 generating enzyme EhPIPKI in actin dynamics and phagocytosis of Entamoeba histolytica. Cellular Microbiology, 21(10), e13087. https://doi.org/10.1111/cmi.13087
  • Agarwal, S., Anand, G., Sharma, S., Rath, P. P., Gourinath, S., & Bhattacharya, A. (2019). EhP3, a homolog of 14-3-3 family of protein participates in actin reorganization and phagocytosis in Entamoeba histolytica. PLOS Pathogens, 15(5), e1007789. https://doi.org/10.1371/journal.ppat.1007789
  • Bhattacharya, A., & Bhattacharya, S. (2019). Patient-driven initiatives for prioritizing drug discovery for rare diseases. Indian Journal of Medical Research, 149(3), 326–328. https://doi.org/10.4103/ijmr.IJMR_499_19
  • Khan, I., Prakash, A., & Agashe, D. (2019). Pathogen susceptibility and fitness costs explain variation in immune priming across natural populations of flour beetles. Journal of Animal Ecology, 88(9), 1332–1342. https://doi.org/10.1111/1365-2656.13030
  • Desai S, Padmanabhan A, Harshe S, Zaidel-Bar R and Kenney LJ (2019) Salmonella biofilms program innate immunity for persistence in C. elegans. PNAS 116 (25) 12462-12467

Year 2018

  • Rajaraman, K., Nair, A., Dey, A., & Balakrishnan, R. (2018). Response Mode Choice in a Multimodally Duetting Paleotropical Pseudophylline Bushcricket. Frontiers in Ecology and Evolution, 6, 172. https://doi.org/10.3389/fevo.2018.00172
  • Khan, I., Prakash, A., Issar, S., Umarani, M., Sasidharan, R., Masagalli, J. N., Lama, P., Venkatesan, R., & Agashe, D. (2018). Female Density-Dependent Chemical Warfare Underlies Fitness Effects of Group Sex Ratio in Flour Beetles. The American Naturalist, 191(3), 306–317. https://doi.org/10.1086/695806

Year 2017

  • Khan, I., Prakash, A., & Agashe, D. (2017). Experimental evolution of insect immune memory versus pathogen resistance. Proceedings of the Royal Society B: Biological Sciences, 284(1869), 20171583. https://doi.org/10.1098/rspb.2017.1583

 

Study at Ashoka

Study at Ashoka

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